gramene v25 release questions

Will Spooner whs at ebi.ac.uk
Thu Jun 14 09:02:30 EDT 2007


Hi Greg,

Gramene will be released on Ensembl v42 again. I am already using Ensembl 
v45 in-house, but have not done enough testing to release this version. I 
expect that we will move to v46 for our next release in 3 months time. In 
the mean time, it is very simple to upgrade the v42 schema databases to 
the latest v45 schema; simply run the schema conversion patch files under 
the sql directory of the ensembl CVS project.

Kind regards,

Will

On Wed, 13 Jun 2007, Gregory S. Brown wrote:

> Hi,
>
> We maintain an external Gramene API with Genome and CMap databases 
> incorporated within a larger Ensembl mirror.  Although the Gramene API and 
> schema is based upon Ensembl's, there is a time lag and thus a version 
> difference between the two as well as some slightly different code that 
> Gramene uses.  Ensembl has just release version 45 and it looks like Gramene 
> will shortly release a version 25 this month.  Ensembl went to the Apache 2.0 
> web server (and mod_perl_2.0) starting with their version 43.  Currently 
> Gramene v24 is based on Ensembl version 42.
>
> Now for my question.  Which version of Ensembl will the next release of 
> Gramene be based on?  If it is not version 43 or higher, when do you 
> anticipate using Ensembl v43 or higher?  Our main concern is to integrate the 
> Gramene genome browser data within an Ensembl v45 mirrored system.
>
> Thank you.
>
> gb
> Greg Brown




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