[Gramene-extdev] Question about the 'NULL' protein domain in Arabidopsis

Greg Brown gregorysbrown at mac.com
Mon Nov 5 16:16:07 EST 2007


Hi,

We first found this 'NULL' domain type in our mirrored version 26.  
There are two things we see that is strange.

1. There are dozens of Arabidopsis genes associated with the 'NULL'  
protein domain that according to InterPro is not a valid domain.  
http://www.gramene.org/Arabidopsis_thaliana/domainview?domainentry=NULL

2. If one of the peptides is selected with a 'NULL' domain the  
protview page lists what apppears to be ALL protein domains, not just  
the ones assigned to the particular protein. Here is an example;  
http://www.gramene.org/Arabidopsis_thaliana/protview? 
transcript=AT1G02405.1-TAIR;db=core

We assume there is some small systematic error with assignments of  
protein domains. Do you anticipate a patched dataset for this version  
or will you wait until version 27 to fix it? Thanks

Greg Brown
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