From whitelaw at tigr.org  Thu Dec  4 15:45:39 2003
From: whitelaw at tigr.org (Whitelaw, Cathy A.)
Date: Thu, 4 Dec 2003 15:45:39 -0500
Subject: Announcement from the Consortium for Maize Genomics 
Message-ID: <3C942D4BA737A74295362E8F2C00FD89436FD2@EXCHANGE.ad.tigr.org>

Dear Colleagues,

 

The Consortium for Maize Genomics is pleased to announce the release of
data and analysis from the third assembly of ~500,000
methylation-filtered (MF) and High C0t (HC) genomic sequences (Release
3.0) at http://www.tigr.org/tdb/tgi/maize/.  

 

Release 3.0 comprises four assemblies: 

(1) MF-only (Release3.0MF), 

(2) HC-only (Release3.0HC), 

(3) MF and HC combined (Release3.0ALL), 

(4) Unfiltered (UF) -- random shotgun reads generated from an unfiltered
maize genomic library -- (Release3.0UF).

 

For Release 3.0 assembly statistics summary, please visit:
http://www.tigr.org/tdb/tgi/maize/release3.0/assembly_summary.shtml

 

For Analysis of repetitive sequences in the maize genomic assemblies,
please visit:
http://www.tigr.org/tdb/tgi/maize/release3.0/repeat_analysis.shtml

 

For Gene matches to maize genomic sequences, please visit:

http://www.tigr.org/tdb/tgi/maize/release3.0/gene_matches.shtml

 

To Download the Release 3.0 assemblies, please visit:

ftp://ftp.tigr.org/pub/data/MAIZE/

 

 

****************************

WE'LL SEQUENCE YOUR MAIZE BAC

Follow the link for more information:
http://www.tigr.org/docs/tigr-scripts/tgi/mbac.pl

 

****************************

 

In addition we've updated the following features to reflect the
Release3.0 AZMs

---GENOME MAP BROWSER---

http://www.tigr.org/tigr-scripts/tgi/marker2.annotator.pl?species=combo_
marker

 

---MAIZE BAC VIEWER---

http://www.tigr.org/tigr-scripts/tgi/BAC.annotator.pl

 

---MAIZE BAC ANNOTATION---

http://www.tigr.org/tigr-scripts/tgi/egc_bac_annot.pl?data=BAC

 

---MAIZE REPEAT DATABASE---

Since the Release2.0 announcement, we have updated our database of maize
repetitive sequences which is available for download.  Please visit the
following link for more information:
http://www.tigr.org/tdb/tgi/maize/repeat_db.shtml 

 

 

 

In conjunction with the "Sequencing the Maize Genome" project we have
created a website for the general public (www.maizegenome.org
<http://www.maizegenome.org/> ) which aims to provide information and
updates relating to active maize genomic sequencing projects.  

 

 

We are constantly searching for ways to improve our website and to make
the data produced by the Consortium for Maize Genomics project easily
accessible and informative to the maize community. As always, we welcome
your feedback -- please e-mail us at http://www.tigr.org/tdb/tgi/maize/ .

 

 

Cathy Whitelaw (The Institute for Genomic Research)

Brad Barbazuk (Donald Danforth Plant Science Center)

 

This project is supported by NSF Plant Genome award, DBI-0221536 

 

 

 

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From fliu at genetics.ac.cn  Tue Dec  2 08:45:44 2003
From: fliu at genetics.ac.cn (liufang)
Date: Tue, 2 Dec 2003 21:45:44 +0800
Subject: about RM564
Message-ID: <200312021345.hB2DjdwQ029270@brie4.cshl.org>

     Dear Sir,
     I would like to know whether there are two copies of RM564 SSR marker in the rice genome with one in Chromosome 4 and the other in Chromosome 6. Thank you for your directions. 

 				

????????liufang
????????fliu at genetics.ac.cn
??????????2003-12-02



From noelyap at ascus.plbr.cornell.edu  Thu Dec  4 18:09:02 2003
From: noelyap at ascus.plbr.cornell.edu (Immanuel Yap)
Date: Thu, 4 Dec 2003 18:09:02 -0500
Subject: about RM564
In-Reply-To: <200312021345.hB2DjdwQ029270@brie4.cshl.org>
References: <200312021345.hB2DjdwQ029270@brie4.cshl.org>
Message-ID: <20031204230902.GD3115@ascus.plbr.cornell.edu>

On Tue, Dec 02, 2003 at 09:45:44PM +0800, liufang wrote:
>      Dear Sir,
>      I would like to know whether there are two copies of RM564 SSR marker in the rice genome with one in Chromosome 4 and the other in Chromosome 6. Thank you for your directions. 

Dear Liufang,

You can use the Gramene "Feature Search" page to find out where a
particular marker has been mapped:

http://www.gramene.org/cmap/feature_search?features=RM564&search_field=both&order_by=&data_source=&submit=Submit

In this case, you can see that RM564 has indeed been mapped to both
chromosomes 4 and 6 in separate studies.  It is unclear whether this
is due to there being two actual copies of RM564 in the rice genome,
or some sort of mapping error, or some other reason.

Regards,
Noel
-- 
Immanuel Yap <ivy1 at cornell.edu>


From achan at tigr.org  Mon Dec 22 15:58:27 2003
From: achan at tigr.org (Agnes Chan)
Date: Mon, 22 Dec 2003 15:58:27 -0500
Subject: email addresses
Message-ID: <3FE75AF3.9090407@tigr.org>

Hi,

I am writing with regard to the email archive listing at your site.

In the following html pages,

http://www.gramene.org/mailarch/2003/0696.html
http://www.gramene.org/mailarch/2003/0586.html

I was wondering if it would be possible to replace the email address 
"(REPLACED)" to our URL "http://www.tigr.org/tdb/tgi/maize/" 
instead, since we have been receiving spam mails at "(REPLACED)" and 
we are trying to track down and replace all current occurrences of the 
actual email address on the internet.  Your help would be greatly 
appreciated.

Thanks in advance.

Regards
Agnes
________________________________________

/Agnes Chan  Ph. D.
Staff Scientist
The Institute for Genomic Research
9712 Medical Center Drive
Rockville, MD 20850

phone (301) 838-5862, fax (301) 838-0208
achan at tigr.org/
________________________________________






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From mds_ali2003 at yahoo.com  Fri Dec 26 00:34:01 2003
From: mds_ali2003 at yahoo.com (=?iso-8859-1?q?Shamsher=20Ali?=)
Date: Fri, 26 Dec 2003 05:34:01 +0000 (GMT)
Subject: fgr (aroma) sequence of rice
Message-ID: <20031226053401.89572.qmail@web12601.mail.yahoo.com>


Hi dear 

Could you please provide the sequence information of fgr or other fragrance giving rice genes or at least the accession nos (ID #) of these genes at your convenience. Your cooperation is highly appreciated.

Sincerely yours

Dr Md. Shamsher Ali, Principal Scientific Officer, Biotechnology Division, Bangladesh Rice Research Institute, Gazipur 1701, Bangladesh. 

 

 


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