From tnakazat at indiana.edu  Tue Nov  2 22:36:11 2004
From: tnakazat at indiana.edu (Nakazato, Takuya)
Date: Tue, 2 Nov 2004 22:36:11 -0500
Subject: genotypes for mapping
Message-ID: <6B6E9A8E3E013F49B00CA2825A423709018EE94E@iu-mssg-mbx06.exchange.iu.edu>

Hi,

 

Are the raw genotype data for the published linkage maps available for
download?  Thank you.

 

Takuya Nakazato

Indiana University Bloomington

Jordan Hall 513

1001 East Third Street

Bloomington, Indiana 47405-3700 U.S.A.

phone: (812)855-5873

fax: (812) 855-6705

 

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From jn66 at cornell.edu  Wed Nov  3 11:16:04 2004
From: jn66 at cornell.edu (Junjian Ni)
Date: Wed, 3 Nov 2004 11:16:04 -0500 (EST)
Subject: genotypes for mapping
In-Reply-To:      <6B6E9A8E3E013F49B00CA2825A423709018EE94E@iu-mssg-mbx06.exchange.iu.ed
     u>
References:     <6B6E9A8E3E013F49B00CA2825A423709018EE94E@iu-mssg-mbx06.exchange.iu.edu>
Message-ID: <4182.128.253.246.144.1099498564.squirrel@128.253.246.144>

Dear Takuya,

Gramene currently does not house the raw genotpye and phenotype data for
those published linkage maps. Please directly contact with the original
authors of the publication to get those data. Good luck.

Junjian Ni
Gramene curator

> Hi,
>
>
>
> Are the raw genotype data for the published linkage maps available for
> download?  Thank you.
>
>
>
> Takuya Nakazato
>
> Indiana University Bloomington
>
> Jordan Hall 513
>
> 1001 East Third Street
>
> Bloomington, Indiana 47405-3700 U.S.A.
>
> phone: (812)855-5873
>
> fax: (812) 855-6705
>
>
>
>




From jterol at ivia.es  Wed Nov 24 08:05:05 2004
From: jterol at ivia.es (Javier Terol)
Date: Wed, 24 Nov 2004 14:05:05 +0100
Subject: rice protein set
Message-ID: <6.1.2.0.0.20041124134901.01b6b4d0@master.ivia.es>

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From msprasad at drr.ap.nic.in  Thu Nov 25 00:28:24 2004
From: msprasad at drr.ap.nic.in (msprasad)
Date: Thu, 25 Nov 2004 10:58:24 +0530
Subject: RG64
Message-ID: <000801c4d2af$9c094720$0d00a8c0@msp>

Please give the information on RG64
Msrinivasprasad, DRR
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From jn66 at cornell.edu  Mon Nov 29 09:05:36 2004
From: jn66 at cornell.edu (Junjian Ni)
Date: Mon, 29 Nov 2004 09:05:36 -0500 (EST)
Subject: RG64
In-Reply-To: <000801c4d2af$9c094720$0d00a8c0@msp>
References: <000801c4d2af$9c094720$0d00a8c0@msp>
Message-ID: <1194.128.253.246.144.1101737136.squirrel@128.253.246.144>

> Please give the information on RG64
> Msrinivasprasad, DRR
>

Please check the following page with RG64 info:
http://www.gramene.org/db/markers/marker_view?marker_name=RG64&marker_type=RFLP&Submit=Submit+Query

http://www.gramene.org/db/cmap/feature_search?features=RG64&search_field=feature_name&order_by=&data_source=Gramene&submit=Submit

Please let's know if require more info.

Junjian Ni
Gramene Curator






From vbryan at nsf.gov  Mon Nov 29 10:51:36 2004
From: vbryan at nsf.gov (Bryan, Victoria J.)
Date: Mon, 29 Nov 2004 10:51:36 -0500
Subject: Image from Gramene Website
Message-ID: <6492B50B48408E428561B21B8C0AC6EB05AC039C@nsfmail05.nsf.gov>

Hi,

We're currently putting together the next National Plant Genome Initiative
Annual Report and would like to use an image from Gramene. Would you be able
to provide us with high resolution (300 dpi) versions of the logo (attached)
from this web sites? If so, could you please complete the Image Permission
form located at http://www.nsf.gov/pubs/forms/nsf1515.doc and fax it back to
me? Please let me know if you do not handle this and who I should I contact.
Please let me know if you have any questions.

Victoria J. Bryan
Science Assistant
Plant Genome Research Program
National Science Foundation               
4201 Wilson Blvd., Suite 615             
Arlington, VA 22230
vbryan at nsf.gov
(703) 292-8470 
(703) 292-7156 (direct line)
(703) 292-9062 (fax)


 <<gramene_logo180.jpg>> 


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From ren at cshl.edu  Mon Nov 29 16:44:47 2004
From: ren at cshl.edu (Liya Ren)
Date: Mon, 29 Nov 2004 16:44:47 -0500
Subject: rice protein set
In-Reply-To: <6.1.2.0.0.20041124134901.01b6b4d0@master.ivia.es>
References: <6.1.2.0.0.20041124134901.01b6b4d0@master.ivia.es>
Message-ID: <41AB984F.5000905@cshl.org>

Hi Javier,

Are you talking about the protein sequences file ?  It's  on 
ftp://ftp.gramene.org/pub/gramene/CURRENT_RELEASE/data/protein/sequence. 
Sorry I forgot to put it there before.

Thanks,

Liya



Javier Terol wrote:

> Hi,
>
> I am interested in downloading the rice protein set, I have been 
> browsing the ftp archives but when I opened the current release of 
> protein data I found the folder empty.
>
> Where can I found the protein files?
>
> Thank you very much in advance.
>
> Regards
>
>                 Javier
>
>    O@@@@@       
>   @@@O@@O@      Dr. Javier Terol Alcayde
>   @O@@@@O@      Instituto Valenciano de Investigaciones Agrarias (IVIA)
>   @@@O@@@@      Carretera Moncada - N?quera, Km. 4,5
>    @@@@O@       46113 Moncada (Valencia)
>      ||         Tel.     96 342 4000 ext. 70160
>      ||         Fax.    96 342 4001
>
>

-- 
Liya Ren 
www.gramene.org
Cold Spring Harbor Laboratory 
516-367-6977



From mjmccorm at mtu.edu  Tue Nov 30 12:27:40 2004
From: mjmccorm at mtu.edu (Matt McCormick)
Date: Tue, 30 Nov 2004 12:27:40 -0500
Subject: tigr id conversion
Message-ID: <1101835660.5146.11.camel@bioinfpc2.bio.mtu.edu>

Hi,
I need to convert the TIGR temporary feat name for the pseudomolecule to
the Ensemble ID for all the genes in Oryza sativa spp japonica.  I wrote
a perl/lwp script to do this but since I need to query 40000+ genes, I
thought it might cause a bit of web traffic.  Can I do this or do you
have a list of the Ensemble ID's you could send me?  Thanks.


Matt McCormick
Bioinformatics Undergraduate
Michigan Technological University



