[Gramene] looking for BLAT
wspooner at cshl.edu
Mon Aug 24 09:44:52 EDT 2009
On 24 Aug 2009, at 14:38, Ken Youens-Clark wrote:
> On Aug 18, 2009, at 2:38 PM, Mary Mangan wrote:
>> Hey folks—
>> I’m updating the Gramene tutorial. We had blastview in the old
>> version, and I see now that the link at the top says BLAST/BLAT.
>> But I can’t seem to find BLAT.
>> Am I looking in the right place? I’ve been here http://gramene.org/Multi/blastview
>> and tried some configuration but I can’t seem to locate it, DNA or
>> BTW: when I clicked the Online Help button from that page I get an
>> error message at Ensembl. http://screencast.com/t/qFHqbsnAryq I
>> can see where BLAT is at Ensembl if I go directly there.
>> Thanks for any guidance. If it isn’t supposed to be there, that’s
>> fine—I’ll just downplay that in the tutorial. But I don’t want to
>> miss it if I should have it in.
>> Oh: when is the next release scheduled? Should I be taking screen
>> shots at this point or should I hold off a bit? I see in the past
>> September is possible.
> I see that our BLAST server is up at the following URL:
> Our 30th release is scheduled for mid-September.
It's probably also worth mentioning that Gramene does not currently
offer a BLAT service. The references to BLAT are a legacy of our reuse
of the Ensembl code, and should be removed. I'll take a look at
removing these for our release in September.
> Ken Youens-Clark
> kclark at cshl.edu
> Gramene.org Project Manager
> Ware Lab/CSHL/USDA-ARS
> Gramene mailing list
> Gramene at brie4.cshl.edu
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